x3cflux.NonStationaryParameterSpace

class x3cflux.NonStationaryParameterSpace

Bases: pybind11_object

Parameter space for isotopically non-stationary 13C-MFA

Attributes

`constraint_violation_tolerance`
`exchange_flux_classification`	Information on exchange flux parameters
`exchange_flux_solution_space`	Reduced exchange flux space
`free_parameter_names`
`inequality_system`	System of linear inequality constraints in terms of free parameters
`net_flux_classification`	Information on net flux parameters
`net_flux_solution_space`	Reduced net flux space
`num_free_parameters`
`num_parameters`
`parameter_names`
`pool_size_classification`	Information on pool size parameters
`pool_size_solution_space`	Reduced pool size space
`stoichiometry`	Stoichiometry of the network model

Methods

`compute_parameters`(self, params)	Compute all metabolic parameters from free parameters
`compute_stoichiometry_error`(self, params)
`contains`(self, params)
`is_feasible`(self, params[, tol])

compute_parameters(self: x3cflux.lib.core.NonStationaryParameterSpace, params: Annotated[numpy.typing.ArrayLike, numpy.float64, '[m, 1]']) → Annotated[numpy.typing.NDArray[numpy.float64], '[m, 1]']

Compute all metabolic parameters from free parameters

Parameters:: params (np.ndarray) – free parameter vector
Returns:: full parameter vector

compute_stoichiometry_error(self: x3cflux.lib.core.NonStationaryParameterSpace, params: Annotated[numpy.typing.ArrayLike, numpy.float64, '[m, 1]']) → float

contains(self: x3cflux.lib.core.NonStationaryParameterSpace, params: Annotated[numpy.typing.ArrayLike, numpy.float64, '[m, 1]']) → bool

property exchange_flux_classification: Information on exchange flux parameters

property exchange_flux_solution_space: Reduced exchange flux space

property inequality_system: System of linear inequality constraints in terms of free parameters

is_feasible(self: x3cflux.lib.core.NonStationaryParameterSpace, params: Annotated[numpy.typing.ArrayLike, numpy.float64, '[m, 1]'], tol: SupportsFloat = 2.220446049250313e-16) → bool

property net_flux_classification: Information on net flux parameters

property net_flux_solution_space: Reduced net flux space

property pool_size_classification: Information on pool size parameters

property pool_size_solution_space: Reduced pool size space

property stoichiometry: Stoichiometry of the network model